bash script

process_dbm.sh

@@ -0,0 +1,75 @@
+#!/bin/bash
+
+helpFunction()
+{
+   echo ""
+   echo "Usage: $0 --input_path parameterA --output_path parameterB --dbm_group parameterC"
+   echo -e "\t--input_path Description of what is parameterA"
+   echo -e "\t--output_path Description of what is parameterB"
+   echo -e "\t-dbm_group Description of what is parameterC"
+   exit 1 # Exit script after printing help
+}
+
+while [ $# -gt 0 ]; do
+  case "$1" in
+    --input_path=*) input_path="${1#*=}" ;;
+    --output_path=*) output_path="${1#*=}" ;;
+    --dbm_group=*) dbm_group="${1#*=}" ;;
+    *) helpFunction ;;
+  esac
+  shift
+done
+
+# Print helpFunction in case parameters are empty
+if [ -z "$input_path" ] || [ -z "$output_path" ]
+then
+   echo "Input or Output path is missing.";
+   helpFunction
+fi
+
+#Checking input path argument
+if [[ -d $input_path ]]; then
+    echo "$input_path is a directory"
+    input_path="$input_path/."
+elif [[ -f $input_path ]]; then
+    echo "$input_path is a file"
+else
+    echo "Error: Input path does not exist"
+    exit 1
+fi
+
+#Checking output path argument
+if [[ -d $output_path ]]; then
+    echo "$output_path is available"
+else
+    mkdir -p "$output_path"
+fi
+
+#Checking dbm group input
+if [[ $dbm_group == *"facial"* ]]; then
+    dbm_new=" facial"
+fi
+if [[ $dbm_group == *"acoustic"* ]]; then
+    dbm_new="$dbm_new acoustic"
+fi
+if [[ $dbm_group == *"movement"* ]]; then
+    dbm_new="$dbm_new movement"
+fi
+
+#docker commands to run container
+docker create -ti --name dbm_container dbm bash
+docker cp $input_path dbm_container:/app/raw_data
+
+docker start dbm_container
+if [ -z "$dbm_new" ]
+  then
+    docker exec -it dbm_container /bin/bash -c "python3 process_data.py --input_path /app/raw_data --output_path /app/output"
+else
+    docker exec -it dbm_container /bin/bash -c "python3 process_data.py --input_path /app/raw_data --output_path /app/output --dbm_group$dbm_new"
+fi
+
+docker cp dbm_container:/app/output $output_path
+docker stop dbm_container
+docker rm dbm_container
+
+exit