diff --git a/dbm_lib/controller/process_feature.py b/dbm_lib/controller/process_feature.py index 00463600..0a9d3dca 100644 --- a/dbm_lib/controller/process_feature.py +++ b/dbm_lib/controller/process_feature.py @@ -120,7 +120,7 @@ def process_movement(video_uri, out_dir, dbm_group, r_config, dlib_model): logger.info('processing head movement....') head_motion.run_head_movement(video_uri, out_dir, r_config) - + logger.info('processing eye blink....') eye_blink.run_eye_blink(video_uri, out_dir, r_config, dlib_model) @@ -128,7 +128,7 @@ def process_movement(video_uri, out_dir, dbm_group, r_config, dlib_model): voice_tremor.run_vtremor(video_uri, out_dir, r_config) logger.info('processing facial tremor....') - face_tremor.fac_tremor_process(video_uri, out_dir, r_config, model_output=True) + facial_tremor.fac_tremor_process(video_uri, out_dir, r_config, model_output=True) def remove_file(file_path): """ diff --git a/dbm_lib/dbm_features/raw_features/movement/__init__.py b/dbm_lib/dbm_features/raw_features/movement/__init__.py index 03fd8909..cafb6e11 100644 --- a/dbm_lib/dbm_features/raw_features/movement/__init__.py +++ b/dbm_lib/dbm_features/raw_features/movement/__init__.py @@ -13,4 +13,4 @@ import os DBMLIB_PATH = os.path.dirname(__file__) DBMLIB_VTREMOR_LIB = os.path.abspath(os.path.join(DBMLIB_PATH, '../../../../resources/libraries/voice_tremor.praat')) -DBMLIB_FTREMOR_CONFIG = os.path.abspath(os.path.join(DBMLIB_PATH, '../resources/features/facial/config.json')) +DBMLIB_FTREMOR_CONFIG = os.path.abspath(os.path.join(DBMLIB_PATH, '../../../../resources/features/facial/config.json')) diff --git a/dbm_lib/dbm_features/raw_features/movement/facial_tremor.py b/dbm_lib/dbm_features/raw_features/movement/facial_tremor.py index 7df1b861..7753eb0b 100644 --- a/dbm_lib/dbm_features/raw_features/movement/facial_tremor.py +++ b/dbm_lib/dbm_features/raw_features/movement/facial_tremor.py @@ -25,7 +25,7 @@ def compute_features(out_dir, df_of, r_config): Returns: features in vector format """ config = json.loads(open(DBMLIB_FTREMOR_CONFIG,'r').read()) - logger.info('json file read') + pattern_x = re.compile("l\d+_x") pattern_y = re.compile("l\d+_y") @@ -40,7 +40,7 @@ def compute_features(out_dir, df_of, r_config): df_of= df_of[(df_of[landmark_columns]!= 0).any(axis=1)] df_of.reset_index(inplace=True) - num_frames = len(df) + num_frames = len(df_of) logger.info("Number of frames to be processed: {}".format(str(num_frames))) landmarks = config['landmarks'] @@ -104,7 +104,7 @@ def compute_features(out_dir, df_of, r_config): for i, landmark in enumerate(landmarks): fac_features_dict['fac_features_mean_{}'.format(landmark)] = [fac_features2[i]] raw_variable_map = 'fac_tremor_median_{}'.format(landmark) - fac_features_dict[r_config.raw_feature[raw_variable_map]] = [fac_features1[i]] + fac_features_dict[r_config.base_raw['raw_feature'][raw_variable_map]] = [fac_features1[i]] fac_features_dict['fac_disp_median_{}'.format(landmark)] = [fac_disp_median[i]] fac_features_dict['fac_corr_{}'.format(landmark)] = [fac_corr[i]] @@ -123,7 +123,7 @@ def empty_frame(landmarks, r_config, error_reason): fac_features_dict = {} for i, landmark in enumerate(landmarks): raw_variable_map = 'fac_tremor_median_{}'.format(landmark) - fac_features_dict[r_config.raw_feature[raw_variable_map]] = [np.nan] + fac_features_dict[r_config.base_raw['raw_feature'][raw_variable_map]] = [np.nan] fac_features_dict['fac_features_mean_{}'.format(landmark)] = [np.nan] fac_features_dict['fac_disp_median_{}'.format(landmark)] = [np.nan] @@ -133,27 +133,32 @@ def empty_frame(landmarks, r_config, error_reason): empty_frame = pd.DataFrame.from_dict(fac_features_dict) return empty_frame -def fac_tremor_process(video_uri,out_dir,r_config, model_output=False): +def fac_tremor_process(video_uri, out_dir, r_config, model_output=False): """ processing input videos + + """ - try: - logger.info('filtering path: ',video_uri,out_dir) - input_loc, out_loc, fl_name = ut.filter_path(video_uri, out_dir) - of_csv_path = glob.glob(join(out_loc, fl_name + '_OF_video_features/*.csv')) +# try: + + input_loc, out_loc, fl_name = ut.filter_path(video_uri, out_dir) + of_csv_path = glob.glob(join(out_loc, fl_name + '_OF_video_features/*.csv')) - if len(of_csv_path)>0: - of_csv = of_csv_path[0] - df_of = pd.read_csv(of_csv, error_bad_lines=False) + if len(of_csv_path)>0: + of_csv = of_csv_path[0] + df_of = pd.read_csv(of_csv, error_bad_lines=False) - logger.info('Processing Output file {} '.format(os.path.join(out_loc, fl_name))) + logger.info('Processing Output file {} '.format(os.path.join(out_loc, fl_name))) - feats = compute_features(of_csv_path , df_of, r_config) - if model_output: - result = score(feats, r_config) - feats = pd.concat([feats, result], axis=1) + feats = compute_features(of_csv_path , df_of, r_config) + +# if model_output: +# result = score(feats, r_config) +# feats = pd.concat([feats, result], axis=1) + + ut.save_output(feats, out_loc, fl_name, ft_dir, csv_ext) - ut.output_audio_feature(feats, new_out_base_dir, '/'+fac_dir, fac_ext) - except Exception as e: + +# except Exception as e: logger.error('Failed to process video file') diff --git a/dbm_lib/dbm_features/raw_features/movement/head_motion.py b/dbm_lib/dbm_features/raw_features/movement/head_motion.py index c45bc123..59179c2e 100644 --- a/dbm_lib/dbm_features/raw_features/movement/head_motion.py +++ b/dbm_lib/dbm_features/raw_features/movement/head_motion.py @@ -179,11 +179,12 @@ def run_head_movement(video_uri, out_dir, r_config): out_dir: (str) Output directory for processed output; r_config: raw variable config object """ try: - + #filtering path to generate input & output path input_loc, out_loc, fl_name = ut.filter_path(video_uri, out_dir) of_csv_path = glob.glob(join(out_loc, fl_name + '_OF_features/*.csv')) + if len(of_csv_path)>0: of_csv = of_csv_path[0] @@ -192,4 +193,4 @@ def run_head_movement(video_uri, out_dir, r_config): logger.info('Processing Output file {} '.format(os.path.join(out_loc, fl_name))) calc_head_mov(video_uri, df_of, out_loc, fl_name, r_config) except Exception as e: - logger.error('Failed to process video file') \ No newline at end of file + logger.error('Failed to process video file') diff --git a/dbm_lib/dbm_features/raw_features/movement/voice_tremor.py b/dbm_lib/dbm_features/raw_features/movement/voice_tremor.py index 52f9c398..18f664b6 100644 --- a/dbm_lib/dbm_features/raw_features/movement/voice_tremor.py +++ b/dbm_lib/dbm_features/raw_features/movement/voice_tremor.py @@ -47,7 +47,7 @@ def prepare_vtrem_output(audio_file, out_loc, r_config, fl_name): df_tremor = tremor_praat(audio_file, r_config) df_tremor[r_config.err_reason] = 'Pass'# will replace with threshold in future release - logger.info('Processing Output file {} '.format(out_loc)) + logger.info('Processing Output file {} '.format(os.path.join(out_loc, fl_name))) ut.save_output(df_tremor, out_loc, fl_name, vt_dir, csv_ext) def prepare_empty_vt(out_loc, fl_name, r_config, error_txt): @@ -61,7 +61,7 @@ def prepare_empty_vt(out_loc, fl_name, r_config, error_txt): out_val = [[np.nan, np.nan, np.nan, np.nan, np.nan, np.nan, error_txt]] df_tremor = pd.DataFrame(out_val, columns = cols) - logger.info('Saving Output file {} '.format(out_loc)) + logger.info('Saving Output file {} '.format(os.path.join(out_loc, fl_name))) ut.save_output(df_tremor, out_loc, fl_name, vt_dir, csv_ext) def run_vtremor(video_uri, out_dir, r_config): @@ -74,9 +74,9 @@ def run_vtremor(video_uri, out_dir, r_config): out_dir: (str) Output directory for processed output """ try: + input_loc, out_loc, fl_name = ut.filter_path(video_uri, out_dir) aud_filter = glob.glob(join(input_loc, fl_name + '.wav')) - if len(aud_filter)>0: audio_file = aud_filter[0] diff --git a/dbm_lib/dbm_features/raw_features/video/open_face_process.py b/dbm_lib/dbm_features/raw_features/video/open_face_process.py index 61828b08..51364521 100644 --- a/dbm_lib/dbm_features/raw_features/video/open_face_process.py +++ b/dbm_lib/dbm_features/raw_features/video/open_face_process.py @@ -15,7 +15,7 @@ from dbm_lib.dbm_features.raw_features.util import util as ut logging.basicConfig(level=logging.INFO) logger=logging.getLogger() -def batch_open_face(filepaths,video_url, input_dir, out_dir, of_path,video_tracking=False): +def batch_open_face(filepaths,video_url, input_dir, out_dir, of_path, video_tracking=False): """ Computes open_face features for the files in filepaths Args: @@ -31,21 +31,22 @@ def batch_open_face(filepaths,video_url, input_dir, out_dir, of_path,video_track Returns: -------- (itreable[str]) list of .csv files - """ + """ if video_tracking: - suffix = '_OF_video_features/' + suffix = '_OF_video_features' else: suffix = '_OF_features' csv_files = [] - + for fp in filepaths: try: _, out_loc, fl_name = ut.filter_path(video_url, out_dir) full_f_name = fl_name + suffix output_directory = os.path.join(out_loc, full_f_name) - + if not os.path.isdir(output_directory): + os.mkdir(output_directory) csv_files.append(ut.compute_open_face_features(fp,output_directory,of_path)) except Exception as e: @@ -69,7 +70,7 @@ def process_open_face(video_uri, input_dir, out_dir, of_path, dbm_group,video_tr return filepaths = [video_uri] - csv_filepaths = batch_open_face(filepaths, video_uri, input_dir, out_dir, of_path,video_tracking) + csv_filepaths = batch_open_face(filepaths, video_uri, input_dir, out_dir, of_path, video_tracking) except Exception as e: logger.error('Failed to process video file') diff --git a/pkg/OpenFace/exe/FaceLandmarkVid/FaceLandmarkVid.cpp b/pkg/OpenFace/exe/FaceLandmarkVid/FaceLandmarkVid.cpp index fafc36a9..058f4dc1 100644 --- a/pkg/OpenFace/exe/FaceLandmarkVid/FaceLandmarkVid.cpp +++ b/pkg/OpenFace/exe/FaceLandmarkVid/FaceLandmarkVid.cpp @@ -155,7 +155,7 @@ int main(int argc, char **argv) std::string base_filename = path.substr(path.find_last_of("/\\") + 1); base_filename = base_filename.replace(base_filename.find(ext),sizeof(ext)-1,""); results.open(out_dir + '/' + base_filename + "_landmark_output.csv"); -// confidence.open(out_dir + '/' + base_filename + "_landmark_likelihoods.csv"); + confidence.open(out_dir + '/' + base_filename + "_landmark_likelihoods.csv"); int lx = 0; int ly = 0; for(lx = 0; lx < 2; lx++){ @@ -163,7 +163,7 @@ int main(int argc, char **argv) if (lx == 0){ results << "l" << ly << "_x,"; -// confidence << "c" << ly <<","; + confidence << "c" << ly <<","; } if (lx == 1){ results << "l" << ly << "_y,"; @@ -172,7 +172,7 @@ int main(int argc, char **argv) } results << "pose_Tx,pose_Ty,pose_Tz,pose_Rx,pose_Ry,pose_Rz" ; results << std::endl; -// confidence << std::endl; + confidence << std::endl; int counter = 0; @@ -207,7 +207,6 @@ int main(int argc, char **argv) // Gaze tracking, absolute gaze direction cv::Point3f gazeDirection0(0, 0, -1); cv::Point3f gazeDirection1(0, 0, -1); - cv::Vec6d pose_estimate(0, 0, 0, 0, 0, 0); // If tracking succeeded and we have an eye model, estimate gaze if (detection_success && face_model.eye_model) @@ -217,9 +216,9 @@ int main(int argc, char **argv) } // Work out the pose of the head from the tracked model - if (detection_success){ - pose_estimate = LandmarkDetector::GetPose(face_model, sequence_reader.fx, sequence_reader.fy, sequence_reader.cx, sequence_reader.cy); - } + + cv::Vec6d pose_estimate = LandmarkDetector::GetPose(face_model, sequence_reader.fx, sequence_reader.fy, sequence_reader.cx, sequence_reader.cy); + @@ -234,11 +233,11 @@ int main(int argc, char **argv) // Displaying the tracking visualizations // std::cout<< "setting observation landmarks"<0 and 'movement' in args.dbm_group: + of.process_open_face(video_file, os.path.dirname(video_file), out_path, OPENFACE_PATH_VIDEO, args.dbm_group, video_tracking=True) pf.process_movement(video_file, out_path, args.dbm_group, r_config, DLIB_SHAPE_MODEL) pf.remove_file(video_file) diff --git a/resources/features/derived_feature.yml b/resources/features/derived_feature.yml index 43db29dc..fc2f3926 100644 --- a/resources/features/derived_feature.yml +++ b/resources/features/derived_feature.yml @@ -2,7 +2,7 @@ derive_feature: #DBM Feature Group FEATURE_GROUP: ['FAC_ASYM', 'FAC_AU', 'FAC_EXP', 'FAC_LMK', 'ACO_INT', 'ACO_FF', 'ACO_HNR', 'ACO_GNE', 'ACO_FM', - 'ACO_JITTER','ACO_SHIMMER', 'ACO_PAUSE', 'ACO_VFS', 'ACO_MFCC', 'MOV_HM', 'MOV_HP', 'EYE_BLINK', 'MOV_VT'] + 'ACO_JITTER','ACO_SHIMMER', 'ACO_PAUSE', 'ACO_VFS', 'ACO_MFCC', 'MOV_HM', 'MOV_HP', 'EYE_BLINK', 'MOV_VT', 'MOV_FT'] #Feature group output file extensions FAC_ASYM_LOC: _facasym @@ -23,6 +23,7 @@ derive_feature: MOV_HP_LOC: _headpose EYE_BLINK_LOC: _eyeblinks MOV_VT_LOC: _vtremor + MOV_FT_LOC: _fac_tremor #Facial category feature group @@ -68,6 +69,7 @@ derive_feature: EYE_BLINK: ['mov_blink_ear', 'vid_dur', 'mov_blinkdur'] MOV_VT: ['mov_freq_trem_freq', 'mov_freq_trem_index', 'mov_freq_trem_pindex', 'mov_amp_trem_freq', 'mov_amp_trem_index', 'mov_amp_trem_pindex'] + MOV_FT: ['fac_tremor_median_5','fac_tremor_median_12','fac_tremor_median_8','fac_tremor_median_48','fac_tremor_median_54','fac_tremor_median_28','fac_tremor_median_51','fac_tremor_median_66','fac_tremor_median_57'] #Calculation for variables # Facial Asymmetry @@ -258,3 +260,12 @@ derive_feature: mov_amp_trem_freq: ['mean'] mov_amp_trem_index: ['mean'] mov_amp_trem_pindex: ['mean'] + fac_tremor_median_5: ['mean'] + fac_tremor_median_12: ['mean'] + fac_tremor_median_8: ['mean'] + fac_tremor_median_48: ['mean'] + fac_tremor_median_54: ['mean'] + fac_tremor_median_28: ['mean'] + fac_tremor_median_51: ['mean'] + fac_tremor_median_66: ['mean'] + fac_tremor_median_57: ['mean']