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facial code refactoring

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jordi.hasianta
2022-09-15 20:52:16 +07:00
parent f8818a4047
commit a07659b206
6 changed files with 549 additions and 373 deletions
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opendbm/dbm_lib/dbm_features/raw_features/video/face_asymmetry.py
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@@ -4,195 +4,231 @@ project_name: DBM
created: 2020-20-07 created: 2020-20-07
""" """
from mpl_toolkits import mplot3d
from matplotlib import pyplot as plt
import time
import numpy as np
import os
import datetime import datetime
import glob import glob
import cv2
from scipy.spatial.transform import Rotation as R
import subprocess
import pandas as pd
from os.path import join
import logging import logging
import os
import subprocess
import time
from os.path import join
from opendbm.dbm_lib.dbm_features.raw_features.video.face_config.face_config_reader import ConfigFaceReader import cv2
from opendbm.dbm_lib.dbm_features.raw_features.util import video_util as vu, util as ut import numpy as np
import pandas as pd
from matplotlib import pyplot as plt
from mpl_toolkits import mplot3d
from scipy.spatial.transform import Rotation as R
from opendbm.dbm_lib.dbm_features.raw_features.util import util as ut
from opendbm.dbm_lib.dbm_features.raw_features.util import video_util as vu
from .face_config.face_config_reader import ConfigFaceReader
logging.basicConfig(level=logging.INFO) logging.basicConfig(level=logging.INFO)
logger=logging.getLogger() logger = logging.getLogger()
face_asym_dir = 'facial/face_asymmetry' face_asym_dir = "facial/face_asymmetry"
csv_ext = '_facasym.csv' csv_ext = "_facasym.csv"
cv2_color_purple = (254,19,188) cv2_color_purple = (254, 19, 188)
color_blue = (0,0,1.0) color_blue = (0, 0, 1.0)
color_green = (0,1.0,0) color_green = (0, 1.0, 0)
color_red = (1.0,0,0) color_red = (1.0, 0, 0)
color_y = (1.0,1.0,0) color_y = (1.0, 1.0, 0)
error_code_message = { error_code_message = {
0: 'pass', 0: "pass",
1: 'confidence less than 80%', 1: "confidence less than 80%",
} }
error_message_code = {y:x for x,y in error_code_message.items()} error_message_code = {y: x for x, y in error_code_message.items()}
def visualize_vid(fn, attr=None, write_out=False): def visualize_vid(fn, attr=None, write_out=False):
vid = cv2.VideoCapture(fn) vid = cv2.VideoCapture(fn)
tot = int(vid.get(cv2.CAP_PROP_FRAME_COUNT)) # tot = int(vid.get(cv2.CAP_PROP_FRAME_COUNT))
fps = vid.get(cv2.CAP_PROP_FPS) fps = vid.get(cv2.CAP_PROP_FPS)
frame_width = int(vid.get(3)) # frame_width = int(vid.get(3))
frame_height = int(vid.get(4)) # frame_height = int(vid.get(4))
if write_out: if write_out:
fig_w = 680 #680 667 676 #frame_width in order of Ali, Vennessa, synthesis fig_w = 680 # 680 667 676 #frame_width in order of Ali, Vennessa, synthesis
fig_h = 659 #659 659 659 #frame_height fig_h = 659 # 659 659 659 #frame_height
out_vid = cv2.VideoWriter('out.mp4',cv2.VideoWriter_fourcc(*'MP4V'), fps, (fig_w,fig_h)) out_vid = cv2.VideoWriter(
"out.mp4", cv2.VideoWriter_fourcc(*"MP4V"), fps, (fig_w, fig_h)
)
plt.figure(figsize=(8, 8)) plt.figure(figsize=(8, 8))
try: try:
frameid = 0 frameid = 0
while(True): while True:
ret, frame = vid.read() ret, frame = vid.read()
if not ret: if not ret:
# Release the Video Device if ret is false # Release the Video Device if ret is false
vid.release() vid.release()
print('Released Video Resource') print("Released Video Resource")
break break
frame = cv2.cvtColor(frame, cv2.COLOR_BGR2RGB) frame = cv2.cvtColor(frame, cv2.COLOR_BGR2RGB)
frameid += 1 frameid += 1
logger.info(frameid, frame.shape) logger.info(frameid, frame.shape)
if 'lmks_frms' in attr: if "lmks_frms" in attr:
lmks_frms = attr['lmks_frms'] lmks_frms = attr["lmks_frms"]
for i in range(lmks_frms[frameid].shape[0]): for i in range(lmks_frms[frameid].shape[0]):
cv2.circle(frame,(int(lmks_frms[frameid][i,0]),int(lmks_frms[frameid][i,1])), 2, cv2_color_purple, -1) cv2.circle(
frame,
(int(lmks_frms[frameid][i, 0]), int(lmks_frms[frameid][i, 1])),
2,
cv2_color_purple,
-1,
)
if write_out: if write_out:
cv2.putText(frame,'Frame: '+str(frameid), (10,50), cv2.FONT_HERSHEY_SIMPLEX, 1, (255,255,255), 3) cv2.putText(
frame,
"Frame: " + str(frameid),
(10, 50),
cv2.FONT_HERSHEY_SIMPLEX,
1,
(255, 255, 255),
3,
)
plt.subplot(211) plt.subplot(211)
plt.imshow(frame) plt.imshow(frame)
plt.axis('off'); plt.pause(0.2); plt.axis("off")
plt.pause(0.2)
if 'score_asym' in attr: if "score_asym" in attr:
ax = plt.subplot(212) ax = plt.subplot(212)
ax.cla() ax.cla()
ax.set_xlim(0,140) #ax.set_xlim(0,300) ax.set_xlim(0, 140) # ax.set_xlim(0,300)
ax.set_ylim(0,10) ax.set_ylim(0, 10)
sa = attr['score_asym'] sa = attr["score_asym"]
s = sa[np.where(sa[:,0] <= frameid),:][0,:,:] s = sa[np.where(sa[:, 0] <= frameid), :][0, :, :]
for i in range(1,s.shape[1]): for i in range(1, s.shape[1]):
plt.plot(s[:,0], s[:,i]) plt.plot(s[:, 0], s[:, i])
plt.legend(['mouth', 'eyebrow', 'eye', 'mouth+eye+eyebrow']) plt.legend(["mouth", "eyebrow", "eye", "mouth+eye+eyebrow"])
plt.minorticks_on() plt.minorticks_on()
plt.grid(b=True, which='major', color='r', linestyle='-') plt.grid(b=True, which="major", color="r", linestyle="-")
plt.grid(b=True, which='minor', color='r', linestyle='--') plt.grid(b=True, which="minor", color="r", linestyle="--")
plt.savefig('tmp.png', bbox_inches='tight') plt.savefig("tmp.png", bbox_inches="tight")
print(cv2.imread('tmp.png').shape) print(cv2.imread("tmp.png").shape)
plt.clf() plt.clf()
if write_out: if write_out:
out_vid.write(cv2.imread('tmp.png')) out_vid.write(cv2.imread("tmp.png"))
except KeyboardInterrupt: except KeyboardInterrupt:
# Release the Video Device # Release the Video Device
vid.release() vid.release()
if write_out: if write_out:
out_vid.release() out_vid.release()
logger.info('Exception, and Video Resource Released') logger.info("Exception, and Video Resource Released")
if write_out: if write_out:
out_vid.release() out_vid.release()
def retrieve_attr(of_df): def retrieve_attr(of_df):
''' """
Retrieve landmarks and pose_translation for each frame from openface output Retrieve landmarks and pose_translation for each frame from openface output
Args: Args:
of_df: dataframe output from openface, including detected landmark coordinates of_df: dataframe output from openface, including detected landmark coordinates
Returns: Returns:
lmks_frms: dictionary, with frame id as key and 68 landmark set as value lmks_frms: dictionary, with frame id as key and 68 landmark set as value
pose_p: dictionary, with frame id as key and pose param as value pose_p: dictionary, with frame id as key and pose param as value
''' """
tot_lmks = 68 # openface specific tot_lmks = 68 # openface specific
if len([i for i in of_df.columns.to_list() if ' x_' in i]) != tot_lmks: if len([i for i in of_df.columns.to_list() if " x_" in i]) != tot_lmks:
return {} return {}
lmks_frms = {} lmks_frms = {}
pose_p = {} pose_p = {}
for fi in sorted(of_df['frame'].to_list()): for fi in sorted(of_df["frame"].to_list()):
lmks = np.zeros((tot_lmks,6)) lmks = np.zeros((tot_lmks, 6))
r = of_df[of_df['frame']==fi] r = of_df[of_df["frame"] == fi]
for i in range(tot_lmks): for i in range(tot_lmks):
lmk_y = r[' y_'+str(i)].iloc[0] lmk_y = r[" y_" + str(i)].iloc[0]
lmk_x = r[' x_'+str(i)].iloc[0] lmk_x = r[" x_" + str(i)].iloc[0]
lmk_X = r[' X_'+str(i)].iloc[0] lmk_X = r[" X_" + str(i)].iloc[0]
lmk_Y = r[' Y_'+str(i)].iloc[0] lmk_Y = r[" Y_" + str(i)].iloc[0]
lmk_Z = r[' Z_'+str(i)].iloc[0] lmk_Z = r[" Z_" + str(i)].iloc[0]
confi = r[' confidence'] confi = r[" confidence"]
lmks[i,:] = [lmk_x, lmk_y, lmk_X, lmk_Y, lmk_Z, confi] lmks[i, :] = [lmk_x, lmk_y, lmk_X, lmk_Y, lmk_Z, confi]
lmks_frms[fi] = lmks lmks_frms[fi] = lmks
pose_p[fi] = [r[' pose_Tx'].iloc[0], r[' pose_Ty'].iloc[0], r[' pose_Tz'].iloc[0], pose_p[fi] = [
r[' pose_Rx'].iloc[0], r[' pose_Ry'].iloc[0], r[' pose_Rz'].iloc[0]] r[" pose_Tx"].iloc[0],
r[" pose_Ty"].iloc[0],
r[" pose_Tz"].iloc[0],
r[" pose_Rx"].iloc[0],
r[" pose_Ry"].iloc[0],
r[" pose_Rz"].iloc[0],
]
return lmks_frms, pose_p return lmks_frms, pose_p
def mirror_point(a, b, c, d, x1, y1, z1): def mirror_point(a, b, c, d, x1, y1, z1):
# mirror a point w.r.t a 3D plane # mirror a point w.r.t a 3D plane
k =(-a * x1-b * y1-c * z1-d)/float((a * a + b * b + c * c)) k = (-a * x1 - b * y1 - c * z1 - d) / float((a * a + b * b + c * c))
x2 = a * k + x1 x2 = a * k + x1
y2 = b * k + y1 y2 = b * k + y1
z2 = c * k + z1 z2 = c * k + z1
x3 = 2 * x2-x1 x3 = 2 * x2 - x1
y3 = 2 * y2-y1 y3 = 2 * y2 - y1
z3 = 2 * z2-z1 z3 = 2 * z2 - z1
return [x3, y3, z3] return [x3, y3, z3]
def dist_vec2plane(vec, nrm): def dist_vec2plane(vec, nrm):
# Calculate the projected length of a vector (vec) to a plane defined by its normal (nrm) # Calculate the projected length of a vector (vec) to a plane defined by its normal (nrm)
return np.sqrt(np.dot(vec, vec) - np.dot(vec, nrm)**2) return np.sqrt(np.dot(vec, vec) - np.dot(vec, nrm) ** 2)
def vis_lmks3d(lmks_frms, vis_idx): def vis_lmks3d(lmks_frms, vis_idx):
""" """
Visualizing facial landmarks Visualizing facial landmarks
""" """
fig = plt.figure() # fig = plt.figure()
color_type = ['b','g','r','y','c'] color_type = ["b", "g", "r", "y", "c"]
assert len(color_type) > len(vis_idx) assert len(color_type) > len(vis_idx)
for fi in sorted(list(lmks_frms.keys())): for fi in sorted(list(lmks_frms.keys())):
ax = plt.axes(projection="3d") ax = plt.axes(projection="3d")
for i,vi in enumerate(vis_idx): for i, vi in enumerate(vis_idx):
ax.scatter(lmks_frms[fi][vi,2], lmks_frms[fi][vi,3], lmks_frms[fi][vi,4], c=color_type[i]) ax.scatter(
lmks_frms[fi][vi, 2],
lmks_frms[fi][vi, 3],
lmks_frms[fi][vi, 4],
c=color_type[i],
)
ax.axes.set_xlim3d(left=-75, right=100) ax.axes.set_xlim3d(left=-75, right=100)
ax.axes.set_ylim3d(bottom=-200, top=25) ax.axes.set_ylim3d(bottom=-200, top=25)
ax.axes.set_zlim3d(bottom=440, top=560) ax.axes.set_zlim3d(bottom=440, top=560)
ax.view_init(-89, -90) #elev, ariz ax.view_init(-89, -90) # elev, ariz
plt.title(str(fi)); ax.set_xlabel('X'); ax.set_ylabel('Y'); ax.set_zlabel('Z') plt.title(str(fi))
ax.set_xlabel("X")
ax.set_ylabel("Y")
ax.set_zlabel("Z")
plt.pause(0.2) plt.pause(0.2)
plt.cla() plt.cla()
plt.draw() plt.draw()
def calc_fac_asymmetry(attr, is_vis=False): def calc_fac_asymmetry(attr, is_vis=False):
''' """
Quantify facial asymmetry Quantify facial asymmetry
Args: Args:
attr: attribute dictionary containing necessary features for calculation, e.g., attr: attribute dictionary containing necessary features for calculation, e.g.,
@@ -200,80 +236,134 @@ def calc_fac_asymmetry(attr, is_vis=False):
pose_param: dictionary, with frame id as key and pose param as value pose_param: dictionary, with frame id as key and pose param as value
Returns: Returns:
score_asym: 2D array of size (num_frms, num_asymm_fea), with frame id as the 0th column, and each remaining column as one asymmetry feature score_asym: 2D array of size (num_frms, num_asymm_fea), with frame id as the 0th column, and each remaining column as one asymmetry feature
''' """
# openface landmark indices # openface landmark indices
lmks_ref_idx = list(range(0,17)) + list(range(27,36)) lmks_ref_idx = list(range(0, 17)) + list(range(27, 36))
lmks_mid_idx = [27,28,29,30,33,51,62,66,57,8] lmks_mid_idx = [27, 28, 29, 30, 33, 51, 62, 66, 57, 8]
lmks_rgt_idx = [0,1,2,3,4,5,6,7, lmks_rgt_idx = [
17,18,19,20,21, 0,
36,37,38,39,40,41, 1,
48,49,50, 2,
59,58, 3,
60,61, 4,
67] 5,
lmks_lft_idx = [16,15,14,13,12,11,10,9, 6,
26,25,24,23,22, 7,
45,44,43,42,47,46, 17,
54,53,52, 18,
55,56, 19,
64,63, 20,
65] 21,
36,
37,
38,
39,
40,
41,
48,
49,
50,
59,
58,
60,
61,
67,
]
lmks_lft_idx = [
16,
15,
14,
13,
12,
11,
10,
9,
26,
25,
24,
23,
22,
45,
44,
43,
42,
47,
46,
54,
53,
52,
55,
56,
64,
63,
65,
]
lmks_mth_idx = list(range(48,68)) lmks_mth_idx = list(range(48, 68))
lmks_ebr_idx = list(range(17,27)) lmks_ebr_idx = list(range(17, 27))
lmks_eye_idx = list(range(36,48)) lmks_eye_idx = list(range(36, 48))
assert len(lmks_lft_idx)==len(lmks_rgt_idx) assert len(lmks_lft_idx) == len(lmks_rgt_idx)
fea_list = ['mouth', 'eyebrow', 'eye', 'composite'] fea_list = ["mouth", "eyebrow", "eye", "composite"]
score_asym = np.empty(shape=(0, 0)) score_asym = np.empty(shape=(0, 0))
if ('lmks_frms' in attr) and ('pose_param' in attr): if ("lmks_frms" in attr) and ("pose_param" in attr):
lmks_frms = attr['lmks_frms'] lmks_frms = attr["lmks_frms"]
pose_p = attr['pose_param'] pose_p = attr["pose_param"]
if is_vis: if is_vis:
vis_lmks3d(lmks_frms, [lmks_lft_idx, lmks_rgt_idx, lmks_mid_idx, lmks_ref_idx]) vis_lmks3d(
lmks_frms, [lmks_lft_idx, lmks_rgt_idx, lmks_mid_idx, lmks_ref_idx]
)
score_asym = np.zeros((len(lmks_frms),len(fea_list)+1+1)) # +1: extra column for error code score_asym = np.zeros(
(len(lmks_frms), len(fea_list) + 1 + 1)
) # +1: extra column for error code
if is_vis: if is_vis:
fig = plt.figure() # fig = plt.figure()
ax = plt.axes(projection="3d") ax = plt.axes(projection="3d")
for s,fi in enumerate(sorted(list(lmks_frms.keys()))): for s, fi in enumerate(sorted(list(lmks_frms.keys()))):
lmks_3d = lmks_frms[fi][:,2:5] lmks_3d = lmks_frms[fi][:, 2:5]
pose = pose_p[fi] pose = pose_p[fi]
err_code = error_message_code['pass'] err_code = error_message_code["pass"]
if lmks_frms[fi][0,5] < 0.8: if lmks_frms[fi][0, 5] < 0.8:
err_code = error_message_code['confidence less than 80%'] err_code = error_message_code["confidence less than 80%"]
score_asym[s,:] = [fi,np.NaN,np.NaN,np.NaN,np.NaN,err_code] score_asym[s, :] = [fi, np.NaN, np.NaN, np.NaN, np.NaN, err_code]
continue continue
rx = R.from_euler('x', pose[3]) rx = R.from_euler("x", pose[3])
ry = R.from_euler('y', pose[4]) ry = R.from_euler("y", pose[4])
rz = R.from_euler('z', pose[5]) rz = R.from_euler("z", pose[5])
vec_pose = rz.apply(ry.apply(rx.apply([0,0,1]))) vec_pose = rz.apply(ry.apply(rx.apply([0, 0, 1])))
anc_idx = [30, 27, 8] # for central plane estimation anc_idx = [30, 27, 8] # for central plane estimation
nrm = np.cross(lmks_3d[anc_idx[2],:] - lmks_3d[anc_idx[0],:], nrm = np.cross(
lmks_3d[anc_idx[1],:] - lmks_3d[anc_idx[0],:]) lmks_3d[anc_idx[2], :] - lmks_3d[anc_idx[0], :],
lmks_3d[anc_idx[1], :] - lmks_3d[anc_idx[0], :],
)
nrm = nrm / np.linalg.norm(nrm) nrm = nrm / np.linalg.norm(nrm)
a,b,c = nrm a, b, c = nrm
d = np.dot(nrm, lmks_3d[anc_idx[0],:]) d = np.dot(nrm, lmks_3d[anc_idx[0], :])
dist_L2R_mth = [] dist_L2R_mth = []
dist_L2R_ebr = [] dist_L2R_ebr = []
dist_L2R_eye = [] dist_L2R_eye = []
dist_com = [] dist_com = []
lmks_rfl = np.empty((0,3)) lmks_rfl = np.empty((0, 3))
src_idx = lmks_lft_idx src_idx = lmks_lft_idx
for k,idx in enumerate(src_idx): for k, idx in enumerate(src_idx):
p_rfl = np.array(mirror_point(a, b, c, -d, lmks_3d[idx,0], lmks_3d[idx,1], lmks_3d[idx,2])) p_rfl = np.array(
mirror_point(
a, b, c, -d, lmks_3d[idx, 0], lmks_3d[idx, 1], lmks_3d[idx, 2]
)
)
lmks_rfl = np.vstack((lmks_rfl, p_rfl)) lmks_rfl = np.vstack((lmks_rfl, p_rfl))
dist = dist_vec2plane((p_rfl-lmks_3d[lmks_rgt_idx[k],:]), vec_pose) dist = dist_vec2plane((p_rfl - lmks_3d[lmks_rgt_idx[k], :]), vec_pose)
if idx in lmks_mth_idx: if idx in lmks_mth_idx:
dist_L2R_mth.append(dist) dist_L2R_mth.append(dist)
@@ -281,15 +371,29 @@ def calc_fac_asymmetry(attr, is_vis=False):
dist_L2R_ebr.append(dist) dist_L2R_ebr.append(dist)
if idx in lmks_eye_idx: if idx in lmks_eye_idx:
dist_L2R_eye.append(dist) dist_L2R_eye.append(dist)
if (idx in lmks_mth_idx) or (idx in lmks_ebr_idx) or (idx in lmks_eye_idx): if (
(idx in lmks_mth_idx)
or (idx in lmks_ebr_idx)
or (idx in lmks_eye_idx)
):
dist_com.append(dist) dist_com.append(dist)
score_asym[s,:] = [fi,np.mean(dist_L2R_mth),np.mean(dist_L2R_ebr),np.mean(dist_L2R_eye),np.mean(dist_com),err_code] score_asym[s, :] = [
fi,
np.mean(dist_L2R_mth),
np.mean(dist_L2R_ebr),
np.mean(dist_L2R_eye),
np.mean(dist_com),
err_code,
]
if is_vis: if is_vis:
ax.scatter(lmks_3d[:,0], lmks_3d[:,1], lmks_3d[:,2]) ax.scatter(lmks_3d[:, 0], lmks_3d[:, 1], lmks_3d[:, 2])
ax.scatter(lmks_rfl[:,0], lmks_rfl[:,1], lmks_rfl[:,2], c='y') ax.scatter(lmks_rfl[:, 0], lmks_rfl[:, 1], lmks_rfl[:, 2], c="y")
ax.scatter(pose_p[fi][0], pose_p[fi][1], pose_p[fi][2], c='c') ax.scatter(pose_p[fi][0], pose_p[fi][1], pose_p[fi][2], c="c")
plt.title('mirrored landmarks, frame: '+str(fi)); ax.set_xlabel('X'); ax.set_ylabel('Y'); ax.set_zlabel('Z') plt.title("mirrored landmarks, frame: " + str(fi))
ax.set_xlabel("X")
ax.set_ylabel("Y")
ax.set_zlabel("Z")
plt.pause(0.2) plt.pause(0.2)
plt.cla() plt.cla()
plt.draw() plt.draw()
@@ -303,27 +407,38 @@ def calc_asym_feature(open_face_csv, f_cfg):
""" """
df_list = [] df_list = []
of_df = pd.read_csv(open_face_csv, error_bad_lines=False) of_df = pd.read_csv(open_face_csv)
lmks_frms, pose_p = retrieve_attr(of_df) lmks_frms, pose_p = retrieve_attr(of_df)
attr = {'lmks_frms': lmks_frms, 'pose_param': pose_p} attr = {"lmks_frms": lmks_frms, "pose_param": pose_p}
score_asym = calc_fac_asymmetry(attr) score_asym = calc_fac_asymmetry(attr)
df_score_asym = pd.DataFrame(score_asym, columns=['frame', f_cfg.fac_AsymMaskMouth, f_cfg.fac_AsymMaskEyebrow, df_score_asym = pd.DataFrame(
f_cfg.fac_AsymMaskEye, f_cfg.fac_AsymMaskCom, f_cfg.err_reason]) score_asym,
df_score_asym[f_cfg.err_reason] = df_score_asym[f_cfg.err_reason].apply(lambda x: error_code_message[x]) columns=[
"frame",
f_cfg.fac_AsymMaskMouth,
f_cfg.fac_AsymMaskEyebrow,
f_cfg.fac_AsymMaskEye,
f_cfg.fac_AsymMaskCom,
f_cfg.err_reason,
],
)
df_score_asym[f_cfg.err_reason] = df_score_asym[f_cfg.err_reason].apply(
lambda x: error_code_message[x]
)
df_score_asym['frame'] = of_df['frame'] df_score_asym["frame"] = of_df["frame"]
df_score_asym['face_id'] = of_df[' face_id'] df_score_asym["face_id"] = of_df[" face_id"]
df_score_asym['timestamp'] = of_df[' timestamp'] df_score_asym["timestamp"] = of_df[" timestamp"]
df_score_asym['confidence'] = of_df[' confidence'] df_score_asym["confidence"] = of_df[" confidence"]
df_score_asym['success'] = of_df[' success'] df_score_asym["success"] = of_df[" success"]
df_list.append(df_score_asym) df_list.append(df_score_asym)
return df_list return df_list
def run_face_asymmetry(video_uri, out_dir, f_cfg): def run_face_asymmetry(video_uri, out_dir, f_cfg, save=True):
""" """
Processing all patient's for calculating facial asymmetry Processing all patient's for calculating facial asymmetry
--------------- ---------------
@@ -334,21 +449,26 @@ def run_face_asymmetry(video_uri, out_dir, f_cfg):
""" """
try: try:
#Baseline logic # Baseline logic
cfr = ConfigFaceReader() ConfigFaceReader()
input_loc, out_loc, fl_name = ut.filter_path(video_uri, out_dir) input_loc, out_loc, fl_name = ut.filter_path(video_uri, out_dir)
of_csv_path = glob.glob(join(out_loc, fl_name + '_openface/*.csv')) of_csv_path = glob.glob(join(out_loc, fl_name + "_openface/*.csv"))
if len(of_csv_path)>0: if len(of_csv_path) > 0:
of_csv = of_csv_path[0] of_csv = of_csv_path[0]
asym_df_list = calc_asym_feature(of_csv, f_cfg) asym_df_list = calc_asym_feature(of_csv, f_cfg)
asym_final_df = pd.concat(asym_df_list, ignore_index=True) asym_final_df = pd.concat(asym_df_list, ignore_index=True)
asym_final_df['dbm_master_url'] = video_uri asym_final_df["dbm_master_url"] = video_uri
logger.info('Processing Output file {} '.format(os.path.join(out_loc, fl_name))) if save:
ut.save_output(asym_final_df, out_loc, fl_name, face_asym_dir, csv_ext) logger.info(
"Processing Output file {} ".format(os.path.join(out_loc, fl_name))
)
ut.save_output(asym_final_df, out_loc, fl_name, face_asym_dir, csv_ext)
return asym_final_df
except Exception as e: except Exception as e:
logger.error('Failed to process video file') e
logger.error("Failed to process video file")

76
opendbm/dbm_lib/dbm_features/raw_features/video/face_au.py
View File

@@ -4,22 +4,25 @@ project_name: DBM
created: 2020-20-07 created: 2020-20-07
""" """
import os
import numpy as np
import pandas as pd
import datetime import datetime
import glob import glob
from os.path import join
import logging import logging
import os
from os.path import join
from opendbm.dbm_lib.dbm_features.raw_features.video.face_config.face_config_reader import ConfigFaceReader import numpy as np
from opendbm.dbm_lib.dbm_features.raw_features.util import video_util as vu, util as ut import pandas as pd
from opendbm.dbm_lib.dbm_features.raw_features.util import util as ut
from opendbm.dbm_lib.dbm_features.raw_features.util import video_util as vu
from .face_config.face_config_reader import ConfigFaceReader
logging.basicConfig(level=logging.INFO) logging.basicConfig(level=logging.INFO)
logger=logging.getLogger() logger = logging.getLogger()
face_au_dir = 'facial/face_au' face_au_dir = "facial/face_au"
csv_ext = '_facau.csv' csv_ext = "_facau.csv"
def extract_col_nm_au(cols): def extract_col_nm_au(cols):
@@ -30,8 +33,8 @@ def extract_col_nm_au(cols):
Returns: Returns:
(list) list of au column names (list) list of au column names
""" """
cols_lmk = [] # cols_lmk = []
au_tags = ' AU' au_tags = " AU"
cols_au = [c for c in cols if au_tags in c] cols_au = [c for c in cols if au_tags in c]
return cols_au return cols_au
@@ -46,19 +49,19 @@ def au_col_nm_map(df):
""" """
dict_au_cols = {} dict_au_cols = {}
for col in list(df): for col in list(df):
if ' AU' in col: if " AU" in col:
idx = col.rfind('_') idx = col.rfind("_")
if idx > -1: if idx > -1:
au_id = col[idx-2:idx] au_id = col[idx - 2 : idx]
if '_r' in col: if "_r" in col:
dict_au_cols[col] = 'fac_AU' + au_id + 'int' dict_au_cols[col] = "fac_AU" + au_id + "int"
if '_c' in col: if "_c" in col:
dict_au_cols[col] = 'fac_AU' + au_id + 'pres' dict_au_cols[col] = "fac_AU" + au_id + "pres"
df.rename(columns=dict_au_cols, inplace=True) df.rename(columns=dict_au_cols, inplace=True)
return df return df
def run_face_au(video_uri, out_dir, f_cfg): def run_face_au(video_uri, out_dir, f_cfg, save=True):
""" """
Processing all patient's for fetching action units Processing all patient's for fetching action units
--------------- ---------------
@@ -69,29 +72,32 @@ def run_face_au(video_uri, out_dir, f_cfg):
""" """
try: try:
#Baseline logic # Baseline logic
cfr = ConfigFaceReader() ConfigFaceReader()
input_loc, out_loc, fl_name = ut.filter_path(video_uri, out_dir) input_loc, out_loc, fl_name = ut.filter_path(video_uri, out_dir)
of_csv_path = glob.glob(join(out_loc, fl_name + '_openface/*.csv')) of_csv_path = glob.glob(join(out_loc, fl_name + "_openface/*.csv"))
if len(of_csv_path)>0: if len(of_csv_path) > 0:
df_of = pd.read_csv(of_csv_path[0], error_bad_lines=False) df_of = pd.read_csv(of_csv_path[0])
df_au = df_of[extract_col_nm_au(df_of)] df_au = df_of[extract_col_nm_au(df_of)]
df_au = df_au.copy() df_au = df_au.copy()
df_au['frame'] = df_of['frame'] df_au["frame"] = df_of["frame"]
df_au['face_id'] = df_of[' face_id'] df_au["face_id"] = df_of[" face_id"]
df_au['timestamp'] = df_of[' timestamp'] df_au["timestamp"] = df_of[" timestamp"]
df_au['confidence'] = df_of[' confidence'] df_au["confidence"] = df_of[" confidence"]
df_au['success'] = df_of[' success'] df_au["success"] = df_of[" success"]
df_au = au_col_nm_map(df_au) df_au = au_col_nm_map(df_au)
df_au['dbm_master_url'] = video_uri df_au["dbm_master_url"] = video_uri
if save:
logger.info('Processing Output file {} '.format(os.path.join(out_loc, fl_name))) logger.info(
ut.save_output(df_au, out_loc, fl_name, face_au_dir, csv_ext) "Processing Output file {} ".format(os.path.join(out_loc, fl_name))
)
ut.save_output(df_au, out_loc, fl_name, face_au_dir, csv_ext)
return df_au
except Exception as e: except Exception as e:
logger.error('Failed to process video file') e
logger.error("Failed to process video file")

62
opendbm/dbm_lib/dbm_features/raw_features/video/face_config/face_config_reader.py
View File

@@ -4,16 +4,22 @@ project_name: DBM
created: 2020-20-07 created: 2020-20-07
""" """
import os
import yaml import yaml
import boto3
from opendbm.dbm_lib.dbm_features.raw_features.video import DBMLIB_FACE_CONFIG DBMLIB_PATH = os.path.dirname(__file__)
DBMLIB_FACE_CONFIG = os.path.abspath(
os.path.join(DBMLIB_PATH, "../../../../../resources/services/face_util.yml")
)
class ConfigFaceReader(object): class ConfigFaceReader(object):
"""Summary """Summary
Read sevice end ponit Read sevice end ponit
""" """
def __init__(self,
service_config_yml=None): def __init__(self, service_config_yml=None):
"""Summary """Summary
Args: Args:
service_config_yml (None, optional): yml file defined service configuration service_config_yml (None, optional): yml file defined service configuration
@@ -24,29 +30,31 @@ class ConfigFaceReader(object):
else: else:
service_config = service_config_yml service_config = service_config_yml
with open(service_config, 'r') as ymlfile: with open(service_config, "r") as ymlfile:
config = yaml.load(ymlfile) config = yaml.load(ymlfile, Loader=yaml.CLoader)
self.ACTION_UNITS = config['cdx_face_config']['ACTION_UNITS'] self.ACTION_UNITS = config["cdx_face_config"]["ACTION_UNITS"]
self.NEG_ACTION_UNITS = config['cdx_face_config']['NEG_ACTION_UNITS'] self.NEG_ACTION_UNITS = config["cdx_face_config"]["NEG_ACTION_UNITS"]
self.POS_ACTION_UNITS = config['cdx_face_config']['POS_ACTION_UNITS'] self.POS_ACTION_UNITS = config["cdx_face_config"]["POS_ACTION_UNITS"]
self.NET_ACTION_UNITS = config['cdx_face_config']['NET_ACTION_UNITS'] self.NET_ACTION_UNITS = config["cdx_face_config"]["NET_ACTION_UNITS"]
self.LOWER_ACTION_UNITS = config['cdx_face_config']['LOWER_ACTION_UNITS'] self.LOWER_ACTION_UNITS = config["cdx_face_config"]["LOWER_ACTION_UNITS"]
self.UPPER_ACTION_UNITS = config['cdx_face_config']['UPPER_ACTION_UNITS'] self.UPPER_ACTION_UNITS = config["cdx_face_config"]["UPPER_ACTION_UNITS"]
self.happiness = config['cdx_face_config']['happiness'] self.happiness = config["cdx_face_config"]["happiness"]
self.sadness = config['cdx_face_config']['sadness'] self.sadness = config["cdx_face_config"]["sadness"]
self.surprise = config['cdx_face_config']['surprise'] self.surprise = config["cdx_face_config"]["surprise"]
self.fear = config['cdx_face_config']['fear'] self.fear = config["cdx_face_config"]["fear"]
self.anger = config['cdx_face_config']['anger'] self.anger = config["cdx_face_config"]["anger"]
self.disgust = config['cdx_face_config']['disgust'] self.disgust = config["cdx_face_config"]["disgust"]
self.contempt = config['cdx_face_config']['contempt'] self.contempt = config["cdx_face_config"]["contempt"]
self.pain = config['cdx_face_config']['pain'] self.pain = config["cdx_face_config"]["pain"]
self.cai = config['cdx_face_config']['CAI'] self.cai = config["cdx_face_config"]["CAI"]
self.SELECTED_FEATURES = config['cdx_face_config']['SELECTED_FEATURES'].split(',') self.SELECTED_FEATURES = config["cdx_face_config"][
self.face_expr_dir = config['cdx_face_config']['face_expr_dir'] "SELECTED_FEATURES"
self.face_asym_dir = config['cdx_face_config']['face_asym_dir'] ].split(",")
self.AU_fl = config['cdx_face_config']['AU_filters'] self.face_expr_dir = config["cdx_face_config"]["face_expr_dir"]
self.au_int = config['cdx_face_config']['au_intensity'] self.face_asym_dir = config["cdx_face_config"]["face_asym_dir"]
self.au_prs = config['cdx_face_config']['au_presence'] self.AU_fl = config["cdx_face_config"]["AU_filters"]
self.au_int = config["cdx_face_config"]["au_intensity"]
self.au_prs = config["cdx_face_config"]["au_presence"]
def get_action_unit(self): def get_action_unit(self):
"""Summary """Summary

70
opendbm/dbm_lib/dbm_features/raw_features/video/face_emotion_expressivity.py
View File

@@ -4,24 +4,27 @@ project_name: DBM
created: 2020-20-07 created: 2020-20-07
""" """
import os
import numpy as np
import pandas as pd
import datetime import datetime
import glob import glob
from os.path import join
import logging import logging
import os
from os.path import join
from opendbm.dbm_lib.dbm_features.raw_features.video.face_config.face_config_reader import ConfigFaceReader import numpy as np
from opendbm.dbm_lib.dbm_features.raw_features.util import video_util as vu, util as ut import pandas as pd
from opendbm.dbm_lib.dbm_features.raw_features.util import util as ut
from opendbm.dbm_lib.dbm_features.raw_features.util import video_util as vu
from .face_config.face_config_reader import ConfigFaceReader
logging.basicConfig(level=logging.INFO) logging.basicConfig(level=logging.INFO)
logger=logging.getLogger() logger = logging.getLogger()
face_expr_dir = 'facial/face_expressivity' face_expr_dir = "facial/face_expressivity"
csv_ext = '_facemo.csv' csv_ext = "_facemo.csv"
#Openface feature extraction # Openface feature extraction
def of_feature(df_of, cfr, f_cfg): def of_feature(df_of, cfr, f_cfg):
""" """
Creating dataframe for face expressivity Creating dataframe for face expressivity
@@ -31,29 +34,31 @@ def of_feature(df_of, cfr, f_cfg):
(list) list of expressivity score for emotions (list) list of expressivity score for emotions
""" """
df_list = [] df_list = []
df_of['s_confidence'] = vu.smooth(df_of[' confidence'].values, window='flat').tolist() df_of["s_confidence"] = vu.smooth(
df_of[" confidence"].values, window="flat"
).tolist()
if 'AU' in cfr.SELECTED_FEATURES : if "AU" in cfr.SELECTED_FEATURES:
vu.calc_of_for_video(df_of, cfr, f_cfg) vu.calc_of_for_video(df_of, cfr, f_cfg)
#Normalizing facial expressivity for Composite and Negative expr(Range 0 to 1) # Normalizing facial expressivity for Composite and Negative expr(Range 0 to 1)
if len(df_of[f_cfg.neg_exp])>0: if len(df_of[f_cfg.neg_exp]) > 0:
df_of[f_cfg.neg_exp] = df_of[f_cfg.neg_exp]/5 df_of[f_cfg.neg_exp] = df_of[f_cfg.neg_exp] / 5
if len(df_of[f_cfg.neg_exp_full])>0: if len(df_of[f_cfg.neg_exp_full]) > 0:
df_of[f_cfg.neg_exp_full] = df_of[f_cfg.neg_exp_full]/5 df_of[f_cfg.neg_exp_full] = df_of[f_cfg.neg_exp_full] / 5
if len(df_of[f_cfg.com_exp])>0: if len(df_of[f_cfg.com_exp]) > 0:
df_of[f_cfg.com_exp] = df_of[f_cfg.com_exp]/7 df_of[f_cfg.com_exp] = df_of[f_cfg.com_exp] / 7
if len(df_of[f_cfg.com_exp_full])>0: if len(df_of[f_cfg.com_exp_full]) > 0:
df_of[f_cfg.com_exp_full] = df_of[f_cfg.com_exp_full]/7 df_of[f_cfg.com_exp_full] = df_of[f_cfg.com_exp_full] / 7
df_list.append(df_of) df_list.append(df_of)
return df_list return df_list
def run_face_expressivity(video_uri, out_dir, f_cfg): def run_face_expressivity(video_uri, out_dir, f_cfg, save=True):
""" """
Processing all patient's for fetching facial landmarks Processing all patient's for fetching facial landmarks
--------------- ---------------
@@ -64,22 +69,27 @@ def run_face_expressivity(video_uri, out_dir, f_cfg):
""" """
try: try:
#Baseline logic # Baseline logic
cfr = ConfigFaceReader() cfr = ConfigFaceReader()
input_loc, out_loc, fl_name = ut.filter_path(video_uri, out_dir) input_loc, out_loc, fl_name = ut.filter_path(video_uri, out_dir)
of_csv_path = glob.glob(join(out_loc, fl_name + '_openface/*.csv')) of_csv_path = glob.glob(join(out_loc, fl_name + "_openface/*.csv"))
if len(of_csv_path)>0: if len(of_csv_path) > 0:
df_of = pd.read_csv(of_csv_path[0], error_bad_lines=False) df_of = pd.read_csv(of_csv_path[0])
df_of = df_of[cfr.AU_fl] df_of = df_of[cfr.AU_fl]
expr_df_list = of_feature(df_of, cfr, f_cfg) expr_df_list = of_feature(df_of, cfr, f_cfg)
exp_final_df = pd.concat(expr_df_list, ignore_index=True) exp_final_df = pd.concat(expr_df_list, ignore_index=True)
exp_final_df['dbm_master_url'] = video_uri exp_final_df["dbm_master_url"] = video_uri
logger.info('Processing Output file {} '.format(os.path.join(out_loc, fl_name))) if save:
ut.save_output(exp_final_df, out_loc, fl_name, face_expr_dir, csv_ext) logger.info(
"Processing Output file {} ".format(os.path.join(out_loc, fl_name))
)
ut.save_output(exp_final_df, out_loc, fl_name, face_expr_dir, csv_ext)
return exp_final_df
except Exception as e: except Exception as e:
logger.error('Failed to process video file') e
logger.error("Failed to process video file")

101
opendbm/dbm_lib/dbm_features/raw_features/video/face_landmark.py
View File

@@ -4,22 +4,26 @@ project_name: DBM
created: 2020-20-07 created: 2020-20-07
""" """
import os
import numpy as np
import pandas as pd
import datetime import datetime
import glob import glob
from os.path import join
import logging import logging
import os
from os.path import join
from opendbm.dbm_lib.dbm_features.raw_features.video.face_config.face_config_reader import ConfigFaceReader import numpy as np
from opendbm.dbm_lib.dbm_features.raw_features.util import video_util as vu, util as ut import pandas as pd
from opendbm.dbm_lib.dbm_features.raw_features.util import util as ut
from opendbm.dbm_lib.dbm_features.raw_features.util import video_util as vu
from .face_config.face_config_reader import ConfigFaceReader
logging.basicConfig(level=logging.INFO) logging.basicConfig(level=logging.INFO)
logger=logging.getLogger() logger = logging.getLogger()
face_lmk_dir = "facial/face_landmark"
csv_ext = "_faclmk.csv"
face_lmk_dir = 'facial/face_landmark'
csv_ext = '_faclmk.csv'
def extract_col_nm_lmk(cols): def extract_col_nm_lmk(cols):
""" """
@@ -30,7 +34,7 @@ def extract_col_nm_lmk(cols):
(list) list of landmark column names (list) list of landmark column names
""" """
cols_lmk = [] cols_lmk = []
lmk_tags = [' y_', ' x_', ' X_', ' Y_', ' Z_'] lmk_tags = [" y_", " x_", " X_", " Y_", " Z_"]
for c in cols: for c in cols:
if any(t in c for t in lmk_tags): if any(t in c for t in lmk_tags):
cols_lmk.append(c) cols_lmk.append(c)
@@ -45,19 +49,19 @@ def lmk_col_nm_map(df):
""" """
dict_lmk_cols = {} dict_lmk_cols = {}
for col in list(df): for col in list(df):
idx = col.rfind('_')+1 idx = col.rfind("_") + 1
if idx > 0: if idx > 0:
lmk_id = col[idx:] if len(col[idx:])>1 else '0'+col[idx:] lmk_id = col[idx:] if len(col[idx:]) > 1 else "0" + col[idx:]
if ' y_' in col: if " y_" in col:
dict_lmk_cols[col] = 'fac_LMK' + lmk_id + 'r' dict_lmk_cols[col] = "fac_LMK" + lmk_id + "r"
if ' x_' in col: if " x_" in col:
dict_lmk_cols[col] = 'fac_LMK' + lmk_id + 'c' dict_lmk_cols[col] = "fac_LMK" + lmk_id + "c"
if ' X_' in col: if " X_" in col:
dict_lmk_cols[col] = 'fac_LMK' + lmk_id + 'X' dict_lmk_cols[col] = "fac_LMK" + lmk_id + "X"
if ' Y_' in col: if " Y_" in col:
dict_lmk_cols[col] = 'fac_LMK' + lmk_id + 'Y' dict_lmk_cols[col] = "fac_LMK" + lmk_id + "Y"
if ' Z_' in col: if " Z_" in col:
dict_lmk_cols[col] = 'fac_LMK' + lmk_id + 'Z' dict_lmk_cols[col] = "fac_LMK" + lmk_id + "Z"
df.rename(columns=dict_lmk_cols, inplace=True) df.rename(columns=dict_lmk_cols, inplace=True)
return df return df
@@ -68,21 +72,31 @@ def add_disp_3D(df):
Args: Args:
df: landmark dataframe df: landmark dataframe
""" """
df = df.sort_values(by=['frame'], ascending=False) df = df.sort_values(by=["frame"], ascending=False)
cols_lmk = [col for col in list(df) if 'fac_LMK' in col] cols_lmk = [col for col in list(df) if "fac_LMK" in col]
df_t = df[cols_lmk] df_t = df[cols_lmk]
df_diff = df_t.diff() df_diff = df_t.diff()
df_diff = df_diff.pow(2) df_diff = df_diff.pow(2)
tot_lmk = 68 # 68 landmark model tot_lmk = 68 # 68 landmark model
for i in range(tot_lmk): for i in range(tot_lmk):
lmk_id = '{:02d}'.format(i) lmk_id = "{:02d}".format(i)
df['fac_LMK'+lmk_id+'disp'] = df_diff[['fac_LMK'+lmk_id+'X', 'fac_LMK'+lmk_id+'Y', 'fac_LMK'+lmk_id+'Z']].sum(axis=1).apply(np.sqrt) df["fac_LMK" + lmk_id + "disp"] = (
df_diff[
[
"fac_LMK" + lmk_id + "X",
"fac_LMK" + lmk_id + "Y",
"fac_LMK" + lmk_id + "Z",
]
]
.sum(axis=1)
.apply(np.sqrt)
)
return df return df
def run_face_landmark(video_uri, out_dir, f_cfg): def run_face_landmark(video_uri, out_dir, f_cfg, save=True):
""" """
Processing all patient's for fetching facial landmarks Processing all patient's for fetching facial landmarks
--------------- ---------------
@@ -93,29 +107,32 @@ def run_face_landmark(video_uri, out_dir, f_cfg):
""" """
try: try:
#Baseline logic # Baseline logic
cfr = ConfigFaceReader() ConfigFaceReader()
input_loc, out_loc, fl_name = ut.filter_path(video_uri, out_dir) input_loc, out_loc, fl_name = ut.filter_path(video_uri, out_dir)
of_csv_path = glob.glob(join(out_loc, fl_name + '_openface/*.csv')) of_csv_path = glob.glob(join(out_loc, fl_name + "_openface/*.csv"))
if len(of_csv_path)>0: if len(of_csv_path) > 0:
df_of = pd.read_csv(of_csv_path[0], error_bad_lines=False) df_of = pd.read_csv(of_csv_path[0])
df_lmk = df_of[extract_col_nm_lmk(df_of)] df_lmk = df_of[extract_col_nm_lmk(df_of)]
df_lmk = df_lmk.copy() df_lmk = df_lmk.copy()
df_lmk['frame'] = df_of['frame'] df_lmk["frame"] = df_of["frame"]
df_lmk['face_id'] = df_of[' face_id'] df_lmk["face_id"] = df_of[" face_id"]
df_lmk['timestamp'] = df_of[' timestamp'] df_lmk["timestamp"] = df_of[" timestamp"]
df_lmk['confidence'] = df_of[' confidence'] df_lmk["confidence"] = df_of[" confidence"]
df_lmk['success'] = df_of[' success'] df_lmk["success"] = df_of[" success"]
df_lmk = lmk_col_nm_map(df_lmk) df_lmk = lmk_col_nm_map(df_lmk)
df_lmk = add_disp_3D(df_lmk) df_lmk = add_disp_3D(df_lmk)
df_lmk['dbm_master_url'] = video_uri df_lmk["dbm_master_url"] = video_uri
logger.info('Processing Output file {} '.format(join(out_loc, fl_name))) if save:
ut.save_output(df_lmk, out_loc, fl_name, face_lmk_dir, csv_ext) logger.info("Processing Output file {} ".format(join(out_loc, fl_name)))
ut.save_output(df_lmk, out_loc, fl_name, face_lmk_dir, csv_ext)
return df_lmk
except Exception as e: except Exception as e:
logger.error('Failed to process video file') e
logger.error("Failed to process video file")

45
opendbm/dbm_lib/dbm_features/raw_features/video/open_face_process.py
View File

@@ -4,19 +4,23 @@ project_name: DBM
created: 2020-20-07 created: 2020-20-07
""" """
import os
import numpy as np
import pandas as pd
import glob import glob
import logging import logging
import os
import numpy as np
import pandas as pd
from opendbm.dbm_lib.dbm_features.raw_features.util import util as ut from opendbm.dbm_lib.dbm_features.raw_features.util import util as ut
logging.basicConfig(level=logging.INFO) logging.basicConfig(level=logging.INFO)
logger=logging.getLogger() logger = logging.getLogger()
def batch_open_face(filepaths,video_url, input_dir, out_dir, of_path, video_tracking=False):
""" Computes open_face features for the files in filepaths def batch_open_face(
filepaths, video_url, input_dir, out_dir, of_path, video_tracking=False
):
"""Computes open_face features for the files in filepaths
Args: Args:
----- -----
@@ -33,9 +37,9 @@ def batch_open_face(filepaths,video_url, input_dir, out_dir, of_path, video_trac
(itreable[str]) list of .csv files (itreable[str]) list of .csv files
""" """
if video_tracking: if video_tracking:
suffix = '_openface_lmk' suffix = "_openface_lmk"
else: else:
suffix = '_openface' suffix = "_openface"
csv_files = [] csv_files = []
@@ -48,14 +52,19 @@ def batch_open_face(filepaths,video_url, input_dir, out_dir, of_path, video_trac
if video_tracking and not os.path.exists(os.path.abspath(output_directory)): if video_tracking and not os.path.exists(os.path.abspath(output_directory)):
os.makedirs(os.path.abspath(output_directory)) os.makedirs(os.path.abspath(output_directory))
csv_files.append(ut.compute_open_face_features(fp,output_directory,of_path)) csv_files.append(
ut.compute_open_face_features(fp, output_directory, of_path)
)
except Exception as e: except Exception as e:
logger.error('Failed to run OpenFace on {}\n{}'.format(fp, e)) logger.error("Failed to run OpenFace on {}\n{}".format(fp, e))
return csv_files return csv_files
def process_open_face(video_uri, input_dir, out_dir, of_path, dbm_group,video_tracking):
def process_open_face(
video_uri, input_dir, out_dir, of_path, dbm_group, video_tracking
):
""" """
Processing all patient's for fetching emotion expressivity Processing all patient's for fetching emotion expressivity
------------------- -------------------
@@ -67,14 +76,20 @@ def process_open_face(video_uri, input_dir, out_dir, of_path, dbm_group,video_tr
""" """
try: try:
if dbm_group != None: if dbm_group is not None:
check_group = ['facial','movement'] #add group here: if you want to use openface output for raw variable calculation check_group = [
"facial",
"movement",
] # add group here: if you want to use openface output for raw variable calculation
check_val = bool(len({*check_group} & {*dbm_group})) check_val = bool(len({*check_group} & {*dbm_group}))
if not check_val: if not check_val:
return return
filepaths = [video_uri] filepaths = [video_uri]
csv_filepaths = batch_open_face(filepaths, video_uri, input_dir, out_dir, of_path, video_tracking) batch_open_face(
filepaths, video_uri, input_dir, out_dir, of_path, video_tracking
)
except Exception as e: except Exception as e:
logger.error('Failed to process video file') e
logger.error("Failed to process video file")