82 lines
2.2 KiB
Bash
82 lines
2.2 KiB
Bash
#!/bin/bash
|
|
|
|
helpFunction()
|
|
{
|
|
echo ""
|
|
echo "Usage: $0 --input_path parameterA --output_path parameterB --dbm_group parameterC"
|
|
echo -e "\t--input_path: path to the input files"
|
|
echo -e "\t--output_path: path to the raw and derived variable output"
|
|
echo -e "\t--dbm_group: list of feature groups"
|
|
echo -e "\t--tr: Toggle for speech transcription(optional)"
|
|
exit 1 # Exit script after printing help
|
|
}
|
|
|
|
while [ $# -gt 0 ]; do
|
|
case "$1" in
|
|
--input_path=*) input_path="${1#*=}" ;;
|
|
--output_path=*) output_path="${1#*=}" ;;
|
|
--dbm_group=*) dbm_group="${1#*=}" ;;
|
|
--tr=*) tr="${1#*=}" ;;
|
|
*) helpFunction ;;
|
|
esac
|
|
shift
|
|
done
|
|
|
|
# Print helpFunction in case parameters are empty
|
|
if [ -z "$input_path" ] || [ -z "$output_path" ]
|
|
then
|
|
echo "Input or Output path is missing.";
|
|
helpFunction
|
|
fi
|
|
|
|
#Checking input path argument
|
|
if [[ -d $input_path ]]; then
|
|
echo "$input_path is a directory"
|
|
input_path="$input_path/."
|
|
elif [[ -f $input_path ]]; then
|
|
echo "$input_path is a file"
|
|
else
|
|
echo "Error: Input path does not exist"
|
|
exit 1
|
|
fi
|
|
|
|
#Checking output path argument
|
|
if [[ -d $output_path ]]; then
|
|
echo "$output_path is available"
|
|
else
|
|
mkdir -p "$output_path"
|
|
fi
|
|
|
|
#Checking dbm group input
|
|
if [[ $dbm_group == *"facial"* ]]; then
|
|
dbm_new=" facial"
|
|
fi
|
|
if [[ $dbm_group == *"acoustic"* ]]; then
|
|
dbm_new="$dbm_new acoustic"
|
|
fi
|
|
if [[ $dbm_group == *"movement"* ]]; then
|
|
dbm_new="$dbm_new movement"
|
|
fi
|
|
if [[ $dbm_group == *"speech"* ]]; then
|
|
dbm_new="$dbm_new speech"
|
|
fi
|
|
if [[ $dbm_group == *"speech"* ]] && [[ ${tr} == "on" ]]; then
|
|
dbm_new="$dbm_new --tr ${tr}"
|
|
fi
|
|
|
|
#docker commands to run container
|
|
docker create -ti --name dbm_container dbm bash
|
|
docker cp $input_path dbm_container:/app/raw_data
|
|
|
|
docker start dbm_container
|
|
if [ -z "$dbm_new" ]
|
|
then
|
|
docker exec -it dbm_container /bin/bash -c "python3 -W ignore process_data.py --input_path /app/raw_data --output_path /app/output"
|
|
else
|
|
docker exec -it dbm_container /bin/bash -c "python3 -W ignore process_data.py --input_path /app/raw_data --output_path /app/output --dbm_group$dbm_new"
|
|
fi
|
|
|
|
docker cp dbm_container:/app/output $output_path
|
|
docker stop dbm_container
|
|
docker rm dbm_container
|
|
exit |